Actionability Assertions

Gene Condition (MONDO ID) OMIM ID Final Assertion
MUT methylmalonic aciduria due to methylmalonyl-CoA mutase deficiency (0009612) 251000 Assertion Pending
MMAA vitamin B12-responsive methylmalonic acidemia type cblA (0009613) 251100 Assertion Pending
MMAB vitamin B12-responsive methylmalonic acidemia type cblB (0009614) 251110 Assertion Pending
MMADHC methylmalonic aciduria and homocystinuria type cblD (0010185) 277410 Assertion Pending
MCEE methylmalonic acidemia due to methylmalonyl-CoA epimerase deficiency (0009615) 251120 Assertion Pending

Actionability Assertion Rationale

  • This topic was initially scored prior to development of the process for making actionability assertions. The Pediatric AWG decided to defer making an assertion until after the topic could be reviewed through the update process.

Actionability Scores

Outcome / Intervention Pair Severity Likelihood Effectiveness Nature of Intervention Total Score
Morbidity (B12 responsive and unresponsive form) / Metabolic management (includes dietary modification, l-carnitine, antibiotics) 2 3C 2B 2 9CB
Morbidity (B12 responsive only) / Injectable vitamin B12 2 3C 2B 3 10CB
View scoring key
Domain of Actionability Scoring Metric State of the Knowledgebase
Severity: What is the nature of the threat to health to an individual? 3 = Sudden death as a reasonably possible outcome
2 = Reasonable possibility of death or major morbidity
1 = Modest morbidity
0 = Minimal or no morbidity
N/A
Likelihood: What is the chance that the outcome will occur? 3 = >40% chance
2 = 5%-39% chance
1 = 1%-4% chance
0 = <1% chance
A = Substantial evidence or evidence from a high tier (tier 1)
B = Moderate evidence or evidence from a moderate tier (tier 2)
C = Minimal evidence or evidence from a lower tier (tier 3 or 4)
D = Poor evidence or evidence not provided in the report
N = Evidence based on expert contributions (tier 5)
Effectiveness: What is the effectiveness of a specific intervention in preventing or diminishing the risk of harm? 3 = Highly effective
2 = Moderately effective
1 = Minimally effective
0 = Controversial or unknown effectiveness
IN = Ineffective/No interventiona
A = Substantial evidence or evidence from a high tier (tier 1)
B = Moderate evidence or evidence from a moderate tier (tier 2)
C = Minimal evidence or evidence from a lower tier (tier 3 or 4)
D = Poor evidence or evidence not provided in the report
N = Evidence based on expert contributions (tier 5)
Nature of intervention: How risky, medically burdensome, or intensive is the intervention? 3 = Low risk, or medically acceptable and low intensity
2 = Moderate risk, moderately acceptable or intensive
1 = Greater risk, less acceptable and substantial intensity
0 = High risk, poorly acceptable or intensive
N/A
a Do not score the remaining categories

Prevalence of the Genetic Condition

Prevalence of methylmalonic aciduria (MMA) has been estimated as 1-9 per 100,000.
View Citations

I Manoli, et al. (2005) NCBI: NBK1231, Methylmalonic acidemia without homocystinuria. Orphanet encyclopedia, ORPHA: 293355., Vitamin B12-responsive methylmalonic acidemia. Orphanet encyclopedia, ORPHA: 28., Baumgartner MR, et al. (2014) PMID: 25205257

Clinical Features (Signs / symptoms)

MMA is an inborn error of vitamin B12 metabolism characterized by gastrointestinal and neurometabolic manifestations. It is caused by complete or partial deficiency of methylmalonyl-CoA mutase (MUT; mut- and mut0 subtypes, respectively), a defect in transport or synthesis of its cofactor adenosyl-cobalamin (MMAA cblA type; MMAB, cblB type; MMADHC, cblD-MMA type), or deficiency of methylmalonyl-CoA epimerase (MCEE). Presentation is variable:

• Infantile completely deficient (mut0) or non-B12-responsive (clbB) is the most common phenotype and presents during infancy. Infants are normal at birth, but develop lethargy, vomiting, and dehydration within the first few months of life. They may also exhibit hepatomegaly, hypotonia, encephalopathy, metabolic acidosis, ketosis and ketonuria, hyperammonemia, and hyperglycemia.

• Partially deficient (mut-) or B12-responsive (cblA, cblD, rarely cblB) is an intermediate phenotype that can occur in the first few months or years of life. Symptoms include feeding problems, failure to thrive, hypotonia, and developmental delay. Some have protein aversion and vomiting, and lethargy after protein intake.

• Methylmalonyl-CoA epimerase (MCEE) deficiency is a persistent, moderate phenotype where findings in infants/children range from complete absence of symptoms to severe metabolic acidosis. Symptoms include ataxia, dysarthria, hypotonia, mild spastic paraparesis, and seizures.

• An atypical or benign/adult version is associated with increased, albeit mild, urinary excretion of methylmalonate. It is uncertain whether these individuals will develop symptoms.

Secondary complications can include intellectual disability, tubulointerstitial nephritis with progressive impairment of renal function, neurologic findings, pancreatitis, growth failure, functional immune impairment, bone marrow failure, optic nerve atrophy, and hepatoblastoma.
View Citations

I Manoli, et al. (2005) NCBI: NBK1231, Methylmalonic acidemia without homocystinuria. Orphanet encyclopedia, ORPHA: 293355., Vitamin B12-responsive methylmalonic acidemia. Orphanet encyclopedia, ORPHA: 28., Baumgartner MR, et al. (2014) PMID: 25205257, Vitamin B12-unresponsive methylmalonic acidemia. Orphanet encyclopedia, ORPHA: 27., Methylmalonic acidemia due to methylmalonyl-CoA epimerase deficiency. Orphanet encyclopedia, ORPHA: 308425.

Natural History (Important subgroups & survival / recovery)

Onset ranges from the neonatal period to adulthood. All phenotypes demonstrate periods of relative health and intermittent metabolic decompensation, usually associated with intercurrent infections and stress. Episodes of catabolic stress are associated with rapid production and accumulation of toxic metabolites which can cause decompensation, and lead to life threatening complications. MMA is associated with substantial morbidity and mortality that correlates with the underlying defect. Individuals with the mut0 and cblB subtypes tend to be more severely affected and have a higher rate of mortality than those with the mut-, cblA, and cblD subtypes. Survival in MMA has improved over time, mainly ability of newborn screening to detect MMA before early childhood encephalopathy.
View Citations

I Manoli, et al. (2005) NCBI: NBK1231, Methylmalonic acidemia without homocystinuria. Orphanet encyclopedia, ORPHA: 293355., Vitamin B12-responsive methylmalonic acidemia. Orphanet encyclopedia, ORPHA: 28., Baumgartner MR, et al. (2014) PMID: 25205257, Vitamin B12-unresponsive methylmalonic acidemia. Orphanet encyclopedia, ORPHA: 27.

Description of sources of evidence:

Tier 1: Evidence from a systematic review or a meta-analysis or clinical practice guideline clearly based on a systematic review.
Tier 2: Evidence from clinical practice guidelines or broad-based expert consensus with non-systematic evidence review.
Tier 3: Evidence from another source with non-systematic review of evidence with primary literature cited.
Tier 4: Evidence from another source with non-systematic review of evidence with no citations to primary data sources.
Tier 5: Evidence from a non-systematically identified source.

Mode of Inheritance

Autosomal Recessive

Prevalence of Genetic Variants

1-2 in 50000
Virtually all cases of MMA are attributed to a pathogenic variant in one of the following genes: MUT (60%), MMAA (25%), MMAB (12%), MCEE (unknown proportion), or MMADHC (unknown proportion). Thus the prevalence of genetic pathogenic variants should be similar to prevalence estimates for MMA (between 1/50,000 to 1/100,000).
Tier 4 View Citations

I Manoli, et al. (2005) NCBI: NBK1231

Penetrance (Includes any high-risk racial or ethnic subgroups)

>= 40 %
Information on penetrance based on molecular detection were not available. However, the following signs/symptoms have been reported in individuals with MMA (including those with infantile and childhood onset):

• Developmental delay: 25-65%

• Seizures/epilepsy: 16-35%

• Movement disorders: 30-45%

• Metabolic stroke like events: 35%

• Chronic renal failure: 28-47% (median age of onset: 6.5 years, range: 1.5-18.6 years)

• Cardiomyopathy: rare, isolated case reports

• Pancreatitis: rare, isolated case reports.

Tier 3 View Citations

Baumgartner MR, et al. (2014) PMID: 25205257

Relative Risk (Includes any high-risk racial or ethnic subgroups)

Unknown
Information on relative risk was not available.

Expressivity

Clinical presentation of MMA can vary and may present with severe manifestations during the neonatal period or as an atypical or “benign” form with onset during adulthood with mild clinical outcomes. The clinical phenotype depends on a number of factors that cannot be accurately predicted by the genotype.
Tier 4 View Citations

I Manoli, et al. (2005) NCBI: NBK1231

Description of sources of evidence:

Tier 1: Evidence from a systematic review or a meta-analysis or clinical practice guideline clearly based on a systematic review.
Tier 2: Evidence from clinical practice guidelines or broad-based expert consensus with non-systematic evidence review.
Tier 3: Evidence from another source with non-systematic review of evidence with primary literature cited.
Tier 4: Evidence from another source with non-systematic review of evidence with no citations to primary data sources.
Tier 5: Evidence from a non-systematically identified source.

Patient Management

The American College of Medical Genetics and Genomics (ACMG) has developed an ACT sheet to help clinical decision-making following a diagnosis of this condition: https://www.acmg.net/PDFLibrary/Elevated%20C3%20Acylcarnitine%20PA%20and%20MA.pdf
To establish the extent of disease in an individual diagnosed with MMA, the following evaluations are recommended:

• Serum chemistry panel, complete blood count with differential, arterial or venous blood gas, plasma ammonium and lactic acid concentration, formal urinalysis, quantitative plasma amino acids, and urine organic acid analysis by gas chromatography and mass spectrometry (GC-MS)

• Measurement of plasma concentrations of methylmalonic acid, methylcitrate, free and total carnitine, and acylcarnitine profile to document propionylcarnitine (C3 species) concentration

• Biochemical genetics consultation.

Tier 4 View Citations

I Manoli, et al. (2005) NCBI: NBK1231

Specialists in physiatry, physical therapy, and occupational therapy can help address the complex challenges faced by patients and families, maximize functionality, and improve quality of life.
Tier 3 View Citations

I Manoli, et al. (2005) NCBI: NBK1231

In MMA, the aim is to stabilize patients on a diet that maintains metabolic homeostasis while allowing normal growth and development. Dietary management includes low natural protein intake, limiting but ensuring essential requirements of the propionic acid precursor amino acids, isoleucine, valine, methionine, and threonine to reduce elevated concentrations of metabolites.
Tier 2 View Citations

Baumgartner MR, et al. (2014) PMID: 25205257

Response to vitamin B12 (cobalamin) should be assessed in every patient. For responders, hydroxocobalamin should be used as long-term treatment.
Tier 2 View Citations

Baumgartner MR, et al. (2014) PMID: 25205257

L-carnitine is useful in the long-term treatment of patients. It enhances propionyl group elimination, regenerates CoA, and transforms toxic CoA esters into less toxic carnitine esters that can be eliminated in the urine.
Tier 2 View Citations

Baumgartner MR, et al. (2014) PMID: 25205257

Oral antibiotics, such as metronidazole, greatly reduce the production of intestinal propionic acid producing bacteria, which may account for a large proportion of total body propionate.
Tier 2 View Citations

Baumgartner MR, et al. (2014) PMID: 25205257

The presence of clinical signs and symptoms (e.g., vomiting, lethargy, respiratory distress) and common biochemical signs of acute decompensation compared to the patient’s baseline should trigger further evaluation and potential adjustment of therapy and monitoring to prevent complications. In addition, any intercurrent illness must prompt closer monitoring and evaluation, given well-documented cases of complications following acute illnesses without biochemical disturbances.
Tier 2 View Citations

Baumgartner MR, et al. (2014) PMID: 25205257

A letter given to the family to present to emergency department physicians that specifies the recommended acute management protocol should be standard of care. Medic Alert bracelets and emergency treatment protocols outlining fluid and electrolyte therapy should be available for all affected individuals.
Tier 4 View Citations

I Manoli, et al. (2005) NCBI: NBK1231

Special considerations regarding choices of anesthetic agents in this patient population may apply.
Tier 3 View Citations

I Manoli, et al. (2005) NCBI: NBK1231

Patients who are usually well controlled can easily decompensate during surgery precipitated by a combination of stress and fasting. Thus, it is important to follow an appropriate protocol, minimizing catabolism by providing adequate amounts of calories.
Tier 2 View Citations

Baumgartner MR, et al. (2014) PMID: 25205257

Successful pregnancies have been reported in mild MMA with no serious problems reported. However, pregnancy should be planned ahead, and metabolic control optimized prior to conception. During pregnancy, labor and delivery, post-partum, and breastfeeding the protein demand/tolerance and carnitine requirements may increase requiring regular monitoring. Treatment should be initiated and adapted accordingly.
Tier 2 View Citations

Baumgartner MR, et al. (2014) PMID: 25205257

Surveillance

Patients require lifelong monitoring with clinical, nutritional, biochemical, neurodevelopmental and psychological assessments that aim at optimizing patient development and performance with age-adapted dietary and drug treatment. This includes regular monitoring of metabolic parameters, along with measures of protein nutrition and overall nutritional status. Intervals between visits should be decided individually on the basis of age, growth, severity, metabolic stability and compliance with diet and therapy.
Tier 2 View Citations

Baumgartner MR, et al. (2014) PMID: 25205257

Regular monitoring for long term complications (renal and cardiac complications) are indicated including a neurologic exam at each visit, biochemistry for kidney and pancreatic function every 6 months, annual cardiac exam (ECG, echocardiography), and annual ophthalmologic exams. In general, when detected, these complications are treated with the same established therapeutic principles of patients without MMA.
Tier 2 View Citations

Baumgartner MR, et al. (2014) PMID: 25205257

Due to an increased risk for osteopenia and osteoporosis, a baseline DEXA is recommended with follow-up according to bone-health status. Extra attention should be paid to patients with chronic kidney disease.
Tier 2 View Citations

Baumgartner MR, et al. (2014) PMID: 25205257

Circumstances to Avoid

Patients are recommended to avoid fasting, increased dietary protein, and stress. Patients should also avoid supplementation with the individual propiogenic amino acids valine and isoleucine, as they directly increase the toxic metabolite load in patients with disordered propionate oxidation.
Tier 4 View Citations

I Manoli, et al. (2005) NCBI: NBK1231

Steroids administered by a systemic route should be avoided if possible due to their catabolic effects on the muscle. If it is unavoidable (e.g., emergency situation), they should be used with caution.
Tier 2 View Citations

Baumgartner MR, et al. (2014) PMID: 25205257

Drugs containing pivalic acid (antibiotic) and valproate decrease L-carnitine concentration in plasma and tissues and should be avoided. Sodium valproate should be used with great caution due to its interference with intermediary metabolism unless there are no other antiepileptic drug alternatives. Nephrotoxic drugs should be avoided due to their potential to precipitate or aggravate renal disease. Immunosuppressive drugs (e.g. cyclophosphamide) should be used with caution. Medications known to prolong the QTc-interval (such as prokinetic drugs) should be avoided if possible.
Tier 2 View Citations

Baumgartner MR, et al. (2014) PMID: 25205257

Description of sources of evidence:

Tier 1: Evidence from a systematic review or a meta-analysis or clinical practice guideline clearly based on a systematic review.
Tier 2: Evidence from clinical practice guidelines or broad-based expert consensus with non-systematic evidence review.
Tier 3: Evidence from another source with non-systematic review of evidence with primary literature cited.
Tier 4: Evidence from another source with non-systematic review of evidence with no citations to primary data sources.
Tier 5: Evidence from a non-systematically identified source.

Nature of Intervention

Identified interventions include emergency management plans, dietary management supplementation, B12 administration, avoidance of fasting and increased dietary protein, antibiotics, and stress regulation. L-carnitine is well-tolerated with few side effects, including transient nausea and vomiting, abdominal cramps, diarrhea, and fish body odor. No risks related to high levels of free and total carnitine have been reported. Chronic antibiotic therapy is not innocuous and introduces the risk of repopulation with resistant flora. This could pose a significant infectious threat and could be especially dangerous in an individual with MMA since most deaths are related to metabolic decompensation, often precipitated by infection.
Context: Pediatric

Chance to Escape Clinical Detection

Newborn screening programs identify newborns with MMA. Without newborn screening, an individual could likely escape detection prior to their first episode.
Context: Pediatric
Tier 4 View Citations

I Manoli, et al. (2005) NCBI: NBK1231

Description of sources of evidence:

Tier 1: Evidence from a systematic review or a meta-analysis or clinical practice guideline clearly based on a systematic review.
Tier 2: Evidence from clinical practice guidelines or broad-based expert consensus with non-systematic evidence review.
Tier 3: Evidence from another source with non-systematic review of evidence with primary literature cited.
Tier 4: Evidence from another source with non-systematic review of evidence with no citations to primary data sources.
Tier 5: Evidence from a non-systematically identified source.
Gene Condition Associations
OMIM Identifier Primary MONDO Identifier Additional MONDO Identifiers
MUT 251000 0009612
MMAA 251100 0009613
MMAB 251110 0009614
MMADHC 277410 0010185
MCEE 251120 0009615

References List

Baumgartner MR, Horster F, Dionisi-Vici C, Haliloglu G, Karall D, Chapman KA, Huemer M, Hochuli M, Assoun M, Ballhausen D, Burlina A, Fowler B, Grunert SC, Grunewald S, Honzik T, Merinero B, Perez-Cerda C, Scholl-Burgi S, Skovby F, Wijburg F, MacDonald A, Martinelli D, Sass JO, Valayannopoulos V, Chakrapani A. (2014) Proposed guidelines for the diagnosis and management of methylmalonic and propionic acidemia. Orphanet journal of rare diseases. 9(1750-1172):130.

I Manoli, JL Sloan, CP Venditti. Isolated Methylmalonic Acidemia. (2005) [Updated Jan 07 2016]. In: RA Pagon, MP Adam, HH Ardinger, et al., editors. GeneReviews® [Internet]. Seattle (WA): University of Washington, Seattle; 1993-2026. Available from: https://www.ncbi.nlm.nih.gov/books/NBK1231/

Methylmalonic acidemia due to methylmalonyl-CoA epimerase deficiency. Orphanet encyclopedia, http://www.orpha.net/consor/cgi-bin/OC_Exp.php?lng=en&Expert=308425

Methylmalonic acidemia without homocystinuria. Orphanet encyclopedia, http://www.orpha.net/consor/cgi-bin/OC_Exp.php?lng=en&Expert=293355

Vitamin B12-responsive methylmalonic acidemia. Orphanet encyclopedia, http://www.orpha.net/consor/cgi-bin/OC_Exp.php?lng=en&Expert=28

Vitamin B12-unresponsive methylmalonic acidemia. Orphanet encyclopedia, http://www.orpha.net/consor/cgi-bin/OC_Exp.php?lng=en&Expert=27

Early Rule-Out Summary

This topic passed the early rule out stage

Findings of Early Rule-Out Assessment

  1. Is there a qualifying resource, such as a practice guideline or systematic review, for the genetic condition?
  2. Does the practice guideline or systematic review indicate that the result is actionable in one or more of the following ways?
  3. a. Patient Management

    b. Surveillance or Screening

    c. Circumstances to Avoid

  4. Is there an intervention that is initiated during childhood (<18 years of age) in an undiagnosed child with the genetic condition?
  5. Does the disease present outside of the neonatal period?
  6. Is this condition an important health problem?
  7. Is there at least on known pathogenic variant with at least moderate penetrance (≥40%) or moderate relative risk (≥2) in any population?