Actionability Assertions

Gene Condition (MONDO ID) OMIM ID Final Assertion
HGD alkaptonuria (0008753) 203500 Moderate Actionability

Actionability Assertion Rationale

  • All experts agreed with the assertion computed according to the rubric.

Actionability Scores

Outcome / Intervention Pair Severity Likelihood Effectiveness Nature of Intervention Total Score
Aortic/cardiac disease / Cardiology follow-up with periodic echocardiogram 2 3N 1C 3 9NC
View scoring key
Domain of Actionability Scoring Metric State of the Knowledgebase
Severity: What is the nature of the threat to health to an individual? 3 = Sudden death as a reasonably possible outcome
2 = Reasonable possibility of death or major morbidity
1 = Modest morbidity
0 = Minimal or no morbidity
N/A
Likelihood: What is the chance that the outcome will occur? 3 = >40% chance
2 = 5%-39% chance
1 = 1%-4% chance
0 = <1% chance
A = Substantial evidence or evidence from a high tier (tier 1)
B = Moderate evidence or evidence from a moderate tier (tier 2)
C = Minimal evidence or evidence from a lower tier (tier 3 or 4)
D = Poor evidence or evidence not provided in the report
N = Evidence based on expert contributions (tier 5)
Effectiveness: What is the effectiveness of a specific intervention in preventing or diminishing the risk of harm? 3 = Highly effective
2 = Moderately effective
1 = Minimally effective
0 = Controversial or unknown effectiveness
IN = Ineffective/No interventiona
A = Substantial evidence or evidence from a high tier (tier 1)
B = Moderate evidence or evidence from a moderate tier (tier 2)
C = Minimal evidence or evidence from a lower tier (tier 3 or 4)
D = Poor evidence or evidence not provided in the report
N = Evidence based on expert contributions (tier 5)
Nature of intervention: How risky, medically burdensome, or intensive is the intervention? 3 = Low risk, or medically acceptable and low intensity
2 = Moderate risk, moderately acceptable or intensive
1 = Greater risk, less acceptable and substantial intensity
0 = High risk, poorly acceptable or intensive
N/A
a Do not score the remaining categories

Prevalence of the Genetic Condition

The incidence of alkaptonuria (AKU) in the US is estimated at 1:250,000 to 1:1,000,000 live births. Worldwide estimates are similar, around 1:111,000 to 1:1,000,000. AKU occurs with high prevalence in the Dominican Republic and northwestern Slovakia, likely as the result of a founder effect. The prevalence of AKU in Slovakia is estimated as 1:19,000.
View Citations

WJ Introne, et al. (2003) NCBI: NBK1454, Lindner M, et al. (2014) PMID: 24479547, Alkaptonuria. Orphanet encyclopedia, ORPHA: 56., Online Medelian Inheritance in Man. (2016) OMIM: 203500, Kastsiuchenka, S.. (2013) URL: www.orpha.net.

Clinical Features (Signs / symptoms)

AKU is caused by the deficiency of an enzyme which results in the accumulation of homogentisic acid (HGA). AKU has three main features: HGA in urine (oxidation of HGA may cause urine to turn dark on standing), ochronosis (bluish-black pigmentation in connective tissue, such as cartilage, skin, and sclera), and arthritis of the spine and larger joints (ochronic arthropathy). Other manifestations include pigment deposition; aortic or mitral valve calcification or regurgitation and occasionally aortic dilation; stones (renal prostate, gall bladder, and salivary glands); renal failure; respiratory insufficiency; and rupture of tendons, muscles, and ligaments.
View Citations

WJ Introne, et al. (2003) NCBI: NBK1454, Lindner M, et al. (2014) PMID: 24479547, Alkaptonuria. Orphanet encyclopedia, ORPHA: 56., Online Medelian Inheritance in Man. (2016) OMIM: 203500, Kastsiuchenka, S.. (2013) URL: www.orpha.net., Arnoux JB, et al. (2015) PMID: 25860819, Ozmanevra R, et al. (2013) PMID: 24191883

Natural History (Important subgroups & survival / recovery)

Though elevated plasma and urinary HGA are present during childhood, individuals are typically asymptomatic until early adulthood. Ochronosis occurs only after age 30 years. A systematic review of 40 patients reported an average age of onset for ocular findings of 40.6 years. Arthritis often begins in the third decade, usually in the spine, and resembles ankylosing spondylitis in its large joint distribution. In one large series, low back pain was observed prior to age 30 years in 49% of individuals and prior to age 40 years in 94%. Half of individuals require at least one joint replacement by age 55. Joint disease appears to start earlier and progress more rapidly in males than females. Because the kidneys are responsible for secreting massive quantities of HGA, impaired renal function can accelerate the development of ochronosis and joint destruction. AKU follows a steady progression from early adulthood and leads to motor disabilities requiring physical aids. Pain can be constant, though life span is generally not reduced. Cardiac complications are often life-threatening and may worsen with prognosis.
View Citations

WJ Introne, et al. (2003) NCBI: NBK1454, Lindner M, et al. (2014) PMID: 24479547, Alkaptonuria. Orphanet encyclopedia, ORPHA: 56., Online Medelian Inheritance in Man. (2016) OMIM: 203500, Arnoux JB, et al. (2015) PMID: 25860819

Description of sources of evidence:

Tier 1: Evidence from a systematic review or a meta-analysis or clinical practice guideline clearly based on a systematic review.
Tier 2: Evidence from clinical practice guidelines or broad-based expert consensus with non-systematic evidence review.
Tier 3: Evidence from another source with non-systematic review of evidence with primary literature cited.
Tier 4: Evidence from another source with non-systematic review of evidence with no citations to primary data sources.
Tier 5: Evidence from a non-systematically identified source.

Mode of Inheritance

Autosomal Recessive
View Citations

WJ Introne, et al. (2003) NCBI: NBK1454, Alkaptonuria. Orphanet encyclopedia, ORPHA: 56., Online Medelian Inheritance in Man. (2016) OMIM: 203500

Prevalence of Genetic Variants

Unknown
Pathogenic variants in HGD account for 90% of cases of AKU.
Tier 4 View Citations

WJ Introne, et al. (2003) NCBI: NBK1454

No information on carrier frequency or prevalence was identified.

Penetrance (Includes any high-risk racial or ethnic subgroups)

>= 40 %
Elevated urinary HGA and ochronotic arthritis occur in all individuals who are homozygous or compound heterozygous for pathogenic variants in HGD.
Tier 4 View Citations

WJ Introne, et al. (2003) NCBI: NBK1454

>= 40 %
A systematic review of 40 patients indicated that 83% of patients had scleral pigmentation.
Tier 1 View Citations

Lindner M, et al. (2014) PMID: 24479547

>= 40 %
By age 64 years, 50% of individuals with AKU have a history of renal stones.
Tier 4 View Citations

WJ Introne, et al. (2003) NCBI: NBK1454

Unknown
A case series of 76 AKU patients who underwent transthoracic echocardiography found the following results: 6 (8%) had aortic valve replacements, 12 (16%) had aortic sclerosis, 7 (9%) had aortic stenosis ranging from mild to severe, 15 had aortic regurgitation, and 7 had aortic root dilation. Among 40 patients who also underwent CT scans, 17 had coverage suitable for evaluation of coronary or valvular calcification. Among these 17, valvular calcification was present in 8 (47%) and 3 (18%) had evidence of significant coronary calcification. By the age of 60, 100% of individuals had evidence of significant intracardiac calcification. Among 40 patients, 26 (65%) patients had evidence of significant vascular calcification in the aorta.
Tier 5 View Citations

Hannoush H, et al. (2012) PMID: 22100375

Relative Risk (Includes any high-risk racial or ethnic subgroups)

Unknown
No information on relative risk was identified.

Expressivity

HGA excretion and disease severity can vary significantly within the same family.
Tier 4 View Citations

WJ Introne, et al. (2003) NCBI: NBK1454

Description of sources of evidence:

Tier 1: Evidence from a systematic review or a meta-analysis or clinical practice guideline clearly based on a systematic review.
Tier 2: Evidence from clinical practice guidelines or broad-based expert consensus with non-systematic evidence review.
Tier 3: Evidence from another source with non-systematic review of evidence with primary literature cited.
Tier 4: Evidence from another source with non-systematic review of evidence with no citations to primary data sources.
Tier 5: Evidence from a non-systematically identified source.

Patient Management

To establish the extent of disease and needs in an individual diagnosed with AKU, the following evaluations are recommended:

• Complete history and physical examination with particular attention to range of motion in the spine and large joints

• Physical medicine and rehabilitation evaluation if limited range of motion or joint pain occurs

• Electrocardiogram and echocardiogram in individuals older than age 40 years

• Renal ultrasound examination or helical abdominal CT to evaluate for the presence of renal calculi

• Consultation with a clinical geneticist and/or genetic counselor.

Tier 4 View Citations

WJ Introne, et al. (2003) NCBI: NBK1454

Although several therapeutic modalities have been investigated, no preventive or curative treatment is available for AKU.
Tier 4 View Citations

WJ Introne, et al. (2003) NCBI: NBK1454

However, a recent expert review of AKU treatment modalities proposed the following sequential therapeutic strategy:

• During childhood: A vegetarian diet with mineral and vitamin supplements if needed. A low protein diet will theoretically decrease HGA production, possibly reducing HGA accumulation. A study of 12 patients with AKU tested a low protein diet for 1 week followed by a high protein diet for 1 week and reported that HGA excretion was significantly lower with the low protein diet, but only among patients younger than 12. However, the long-term clinical effects are not clear.

• During adulthood: Nitisinone and a mild protein restriction. In trials of adult AKU patients, a daily dose of nitisinone reduced urine and plasma HGA concentrations by 95%, a result sustained during 3 years. No long-term benefit of nitisinone was found on the rheumatologic parameters and, at best, suggested a limited progression of the associated aortic valve disease.

Tier 2 View Citations

Arnoux JB, et al. (2015) PMID: 25860819

Joint pain is substantial in individuals with AKU, and close attention to pain control is necessary. Pain management may include physical and occupational therapy and surgical replacement of the large joints. In general, the goal of joint replacement is pain relief rather than increased range of motion.
Tier 4 View Citations

WJ Introne, et al. (2003) NCBI: NBK1454

A systematic review of 13 AKU cases in the literature reported that most cases had received bilateral arthroplasty, all with satisfactory results. However, the criteria for a satisfactory outcome was not defined and reports of pre- and post-operative outcomes for all cases were not available.
Tier 1 View Citations

Ozmanevra R, et al. (2013) PMID: 24191883

Specific surgical recommendations include preoperative assessment as well as anesthesia and other considerations. Preoperative assessments should include spinal mobility and cardiovascular system. Degenerative changes of the lumbar spine may complicate regional anesthesia, while calcification of interspinous ligaments make epidural approaches difficult if not impossible. Additionally, excessive pigment deposition may interfere with pulse oximeter monitoring; and stiffness of cartilage in the chest wall may cause failure to wean from mechanical ventilation or dyspnea.
Tier 4 View Citations

Kastsiuchenka, S.. (2013) URL: www.orpha.net.

Surveillance

Surveillance for cardiac complications every one to two years is advisable after age 40 years and should include:

• Echocardiography to detect aortic dilation and aortic or mitral valve calcification and stenosis

• Surveillance CT scans in affected individuals with coronary artery calcification.

Tier 4 View Citations

WJ Introne, et al. (2003) NCBI: NBK1454

No evidence for the effectiveness of cardiac surveillance was available for AKU. However, recommendations for management of valvular heart disease (VHD) from unspecified etiology indicate that echocardiography is key to confirm the diagnosis of VHD and assess its severity and prognosis. In asymptomatic patients with aortic stenosis (AS), the wide variability of the rate of progression heightens the need for patients to be educated about the importance of follow-up with echocardiography and reporting symptoms as soon as they develop. Aortic valve replacement (AVR) is the definitive therapy for severe AS and is the traditional treatment for aortic regurgitation (AR). ARV in symptomatic AS patients has been shown to prolong and improve quality of life, even in patients over 80 years of age. Treatment for AS and AR with concomitant aneurysm/dilatation of the ascending aorta generally consists of combined replacement of the aorta and valve with reimplantation of the coronary arteries
Tier 2 View Citations

Vahanian A, et al. (2012) PMID: 22922698

Urologic complications become more prevalent after age 40 years:

• Routine surveillance is not recommended, but awareness of this potential complication is advised.

• Ochronotic prostate stones appear on radiography; renal stones can be identified by ultrasonography and helical abdominal CT.

Tier 4 View Citations

WJ Introne, et al. (2003) NCBI: NBK1454

Circumstances to Avoid

Avoidance of physical stress to the spine and large joints, including heavy manual labor or high impact sports, may reduce the progression of severe arthritis. Specifically, younger individuals with AKU should be directed toward non-contact and lower-impact sports.
Tier 4 View Citations

WJ Introne, et al. (2003) NCBI: NBK1454

Description of sources of evidence:

Tier 1: Evidence from a systematic review or a meta-analysis or clinical practice guideline clearly based on a systematic review.
Tier 2: Evidence from clinical practice guidelines or broad-based expert consensus with non-systematic evidence review.
Tier 3: Evidence from another source with non-systematic review of evidence with primary literature cited.
Tier 4: Evidence from another source with non-systematic review of evidence with no citations to primary data sources.
Tier 5: Evidence from a non-systematically identified source.

Nature of Intervention

Interventions identified in this report include imaging surveillance, surgical management, avoidance of stressors to spine and large joins, a low protein diet, and nitisinone. The only side effect of nitisonone is the expected rise of plasma tyrosine, and corneal lesions have been observed due to the poor solubility of tyrosine.
Context: Adult
View Citations

Arnoux JB, et al. (2015) PMID: 25860819

Chance to Escape Clinical Detection

In some individuals, the diagnosis of AKU is identified only after the individual seeks medical attention for chronic joint pain or after black articular cartilage is noted during orthopedic surgery. Urine darkening, though present in infancy, may not occur for several hours after voiding and many individuals never observe any abnormal color to their urine.
Context: Adult
Tier 4 View Citations

WJ Introne, et al. (2003) NCBI: NBK1454

In a systematic review of 40 patients with AKU, the initial diagnosis was not determined correctly in six cases.
Context: Adult
Tier 1 View Citations

Lindner M, et al. (2014) PMID: 24479547

Description of sources of evidence:

Tier 1: Evidence from a systematic review or a meta-analysis or clinical practice guideline clearly based on a systematic review.
Tier 2: Evidence from clinical practice guidelines or broad-based expert consensus with non-systematic evidence review.
Tier 3: Evidence from another source with non-systematic review of evidence with primary literature cited.
Tier 4: Evidence from another source with non-systematic review of evidence with no citations to primary data sources.
Tier 5: Evidence from a non-systematically identified source.
Gene Condition Associations
OMIM Identifier Primary MONDO Identifier Additional MONDO Identifiers
HGD 203500 0008753

References List

ALKAPTONURIA; AKU. Online Medelian Inheritance in Man, OMIM®. Johns Hopkins University, Baltimore, MD. MIM: 203500, (2016) World Wide Web URL: http://omim.org/

Arnoux JB, Le Quan Sang KH, Brassier A, Grisel C, Servais A, Wippf J, Dubois S, Sireau N, Job-Deslandre C, Ranganath L, de Lonlay P. (2015) Old treatments for new insights and strategies: proposed management in adults and children with alkaptonuria. Journal of inherited metabolic disease. 38(5):791-6.

Hannoush H, Introne WJ, Chen MY, Lee SJ, O'Brien K, Suwannarat P, Kayser MA, Gahl WA, Sachdev V. (2012) Aortic stenosis and vascular calcifications in alkaptonuria. Molecular genetics and metabolism. 105(2):198-202.

Kastsiuchenka, S.. Anesthesia recommendations for patients suffering from Alkaptonuria. orphananesthesia (2013) URL: https://www.orpha.net/data/patho/Pro/en/Alkaptonuria_EN.pdf

Lindner M, Bertelmann T. (2014) On the ocular findings in ochronosis: a systematic review of literature. BMC ophthalmology. 14(1471-2415):12.

Ozmanevra R, Guran O, Karatosun V, Gunal I. (2013) Total knee arthroplasty in ochronosis: a case report and critical review of the literature. Eklem hastaliklari ve cerrahisi = Joint diseases & related surgery. 24(3):169-72.

Vahanian A, Alfieri O, Andreotti F, Antunes MJ, Baron-Esquivias G, Baumgartner H, Borger MA, Carrel TP, De Bonis M, Evangelista A, Falk V, Lung B, Lancellotti P, Pierard L, Price S, Schafers HJ, Schuler G, Stepinska J, Swedberg K, Takkenberg J, Von Oppell UO, Windecker S, Zamorano JL, Zembala M. (2012) Guidelines on the management of valvular heart disease (version 2012): the Joint Task Force on the Management of Valvular Heart Disease of the European Society of Cardiology (ESC) and the European Association for Cardio-Thoracic Surgery (EACTS). European journal of cardio-thoracic surgery : official journal of the European Association for Cardio-thoracic Surgery. 42(4):S1-44.

WJ Introne, WA Gahl. Alkaptonuria. (2003) [Updated May 12 2016]. In: MP Adam, HH Ardinger, RA Pagon, et al., editors. GeneReviews® [Internet]. Seattle (WA): University of Washington, Seattle; 1993-2026. Available from: https://www.ncbi.nlm.nih.gov/books/NBK1454/

Early Rule-Out Summary

This topic did not pass the early rule out stage due to insufficient evidence for actionability. However, the Actionability Working Group discussed and granted an exception to move this topic forward for a full evidence curation and summary report.

Findings of Early Rule-Out Assessment

  1. Is there a qualifying resource, such as a practice guideline or systematic review, for the genetic condition?
  2. Does the practice guideline or systematic review indicate that the result is actionable in one or more of the following ways?
  3. a. Patient Management

    b. Surveillance or Screening

    c. Circumstances to Avoid

  4. Is it actionable in an undiagnosed adult with the condition?
  5. Is this condition an important health problem?
  6. Is there at least on known pathogenic variant with at least moderate penetrance (≥40%) or moderate relative risk (≥2) in any population?